Cortical folds graph

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Anatomist Show Fold Graph
Anatomist Show Fold Graph 2 views - general
Anatomist Show Fold Graph 4 views - general
Anatomist Show Symmetrized Folds Graph
Compute Cortical Fold Graph Upgrade From Old
Compute pairwise distances for a given sulcus
Cortical Fold Arg (3.0)
Cortical Fold Graph (3.1+)
Cortical Fold Graph (general)
Cortical Fold Graph (one hemisphere)
Cortical Fold Graph 2007-2011 (general)
Cortical Fold Graph Upgrade Structure
Cortical Folds Graph
Create Cortical Constraints Texture
Create Right Hemisphere Cortical Constraints Texture
Create Sulcus Label Volume
Folds graph over-segmentation
Get Sulci Mesh From Graph
Graph Structure (3.0)
Graph Structure (3.1)
GraphComplete
Hemi Surfaces and Sulci Extraction
Hemisphere Cortical Folds Graph
Hemisphere Sulci Thickness and Volumes
Hemisphere Sulci Voronoi
Morphologist 2013
Morphologist 2015
Morphologist 2021
Primatologist
Right Insular Pole Projection
Simplified Morphologist 2015
SPAM recognition, global registration
SPAM recognition, local registration
SPAM recognition, Markovian model
Sulcal Lines Extraction Left
Sulcal Lines Extraction Right
Sulcal Parcellation
Sulci Recognition (both hemispheres)
Sulci Recognition with SPAM
Sulci Voronoi
Sulcus Parameterization
Sulcus Parameterization 2015
Surfaces and Sulci Extraction
Transfer Sulci Labels

Associated formats

Graph and data

Associated ontology rules

  • flat :
  • ./L<filename>
    ./R<filename>
  • brainvisa-3.2.0 :
  • {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/L<subject>
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/R<subject>
    {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/folds/{graph_version}/left/<side>_<subject>
    {center}/{subject}/anatomical_mri/{acquisition}/{analysis}/folds/{graph_version}/right/<side>_<subject>
  • brainvisa-3.0 :
  • {protocol}/{subject}/sulci/default/L<subject>
    {protocol}/{subject}/sulci/default/R<subject>
    {protocol}/{subject}/sulci/{sulciGraph}/L<subject>
    {protocol}/{subject}/sulci/{sulciGraph}/R<subject>
    {protocol}/{subject}/sulci/{acquisition}/default/L<subject>
    {protocol}/{subject}/sulci/{acquisition}/default/R<subject>
    {protocol}/{subject}/sulci/{acquisition}/{sulciGraph}/L<subject>
    {protocol}/{subject}/sulci/{acquisition}/{sulciGraph}/R<subject>
    {protocol}/{subject}/graphe/L<subject>
    {protocol}/{subject}/graphe/R<subject>
    {protocol}/{subject}/graphe/{acquisition}/L<subject>
    {protocol}/{subject}/graphe/{acquisition}/R<subject>
  • brainvisa-3.1.0 :
  • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/L<subject>
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/R<subject>

    Key attributes

  • flat :
  • side ,  manually_labelled ,  automatically_labelled
  • brainvisa-3.2.0 :
  • Study ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  Template ,  side ,  manually_labelled ,  automatically_labelled ,  origin_subject ,  rescan ,  acquisition_date ,  time_point ,  time_duration ,  mapped ,  contrast ,  center ,  modality ,  best
  • brainvisa-3.0 :
  • protocol ,  subject ,  side ,  graph_version ,  acquisition ,  sulciGraph ,  parallel_recognition ,  sulci_recognition_session ,  manually_labelled ,  automatically_labelled ,  warped_to_vishnu
  • brainvisa-3.1.0 :
  • protocol ,  subject ,  acquisition ,  analysis ,  graph_version ,  side ,  sulci_recognition_session ,  manually_labelled ,  automatically_labelled ,  best